PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11369_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 584aa    MW: 65381.5 Da    PI: 5.3366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11369_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14389436355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++h   Er+RR+++N++f +Lr+++P+ +      K +K++iL  ++eY+++Lq
  RrC11369_p1 389 ANHALSERKRREKLNDRFITLRSMIPSiS------KTDKVSILDDTIEYLQELQ 436
                  58999**********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-4214179IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.358386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-19388454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-12389436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-15390440No hitNo description
Gene3DG3DSA:4.10.280.104.6E-18390448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-18392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MATVENRMMP ENLKKHLAVS WGDGYYNGDI KTRKTVQASE VKADQLGLER SEQLRELYES  60
LSLAESSTSC GSQVNRRASA SSLSPEDLTD TEWYYLVCMS FVFNIGEGVP GGVLANGQPI  120
WLCNAHTADS KVFTRSLLAK SASLLTVVCF PFLGGVLEIG TTEHVAENLN VIQCVKTLFL  180
EAPHGTLSTR SDYQEIFDPL SHDKYIPVFG TEAFPTTSTS VYEQEPDDHD SFINGGGASQ  240
VQSWQFVGEE LSNCVHQPLN SSDCVSQTFV GTTGRVTCGP RKSRNQRLDQ IQEQNNRVNM  300
DDDVHYQGVI STIFKTTHQL VLGPQFQNFD KRSSFTRWRR SSLSAKTLGE KSQNMLKKII  360
SEVPRMHQKK ALLPDTPEDS GFKVGDETAN HALSERKRRE KLNDRFITLR SMIPSISKTD  420
KVSILDDTIE YLQELQRRVQ ELESCRESDG KEMRMAMKRK KMEDEDERVS ANCLKSKRKE  480
SESDVNVEED EPADTGYAGL TDNLRIGSFG NEVVIELRCA WREGILLEIM DVISDLNLDS  540
HSVQSSTGDG LLCLTVNCKH KGTKIATTGV IQNALQRVAW IFVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-111717945192Transcription factor MYC3
4rqw_B6e-111717945192Transcription factor MYC3
4rs9_A6e-111717945192Transcription factor MYC3
4yz6_A6e-111717945192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394399ERKRRE
2395400RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882070.0KF188207.1 Brassica villosa BVEGL3-1 (BVEGL3-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721039.10.0PREDICTED: transcription factor EGL1-like
SwissprotQ9CAD00.0EGL1_ARATH; Transcription factor EGL1
TrEMBLC4WRH00.0C4WRH0_RAPSA; Putative transcription factor
STRINGBra027653.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.30.0bHLH family protein